All Tools in Analyzing

Addgene

Biology

A non-profit plasmid sharing platform

AMiner

Biology

A free online service for academic social network analysis and mining.

Argo

Biology

A web text mining-based workbench supporting curation

Arrowsmith

Biology

Identify biologically meaningful links between two sets of Medline articles.

AskWonder

Provides instant access to the intellect and fact-finding skills of a network of analysts.

AsPredicted

Health

Generates a short, time-stamped pre-registration document that is easy to share.

Atomic Simulation Environment

Physical Science and Technology

Set of tools and Python modules for setting up, manipulating, running, visualizing and analyzing atomistic simulations.

Avogadro

Avogadro is an advanced molecule editor and visualizer

Benchling

Biology

Transform your R&D with the industry's most widely adopted Life Sciences R&D Cloud.

Bibliogo

Biology

Free reference management and collaboration tool that allows users to search an online catalog of millions of documents.

Biocompare

Biology

An online review resource of lab equipment for the world's scientific community.

Biostars

Biology

Focus on bioinformatics, computational genomics, and biological data analysis.

Bookkit

Physical Science and Technology

A lab management system that helps to organize equipment and service bookings

Bright Lab

Biology

Brilliantly Connected Research

Cambridge Structural Database (CSD)

Biology

Repository for small-molecule organic and metal-organic crystal structures.

CitEc

Provides citation analysis for economics papers distributed in the RePEc digital library.

Clustermarket

Access thousands of scientific instruments on demand

Colaboratory

A data analysis tool that combines text, code, and code outputs into a single doc

ContentMine

Biology

Aims to enable everyone to perform research.

Coot

Biology

Macromolecular model building based on X-ray data.

COSMOtherm

Physical Science and Technology

COSMOtherm is the universal tool for predictive property calculation of liquids, and combines quantum chemistry and thermodynamics.

Crossmark

Quick and easy access to the current status of an item of content.

Crossref Simple Text Query

Biology

Batch retrieving DOI's based on free style bibliography

CrowdTruth

Biology

Open-source framework for crowdsourcing annotation data on text, images, videos

Cytoscape

Biology

Network Data Integration, Analysis, and Visualization in a Box.

Data One

Earth and Environment

Find data from affiliated member repositories

Dataverse

Open source research data repository software

DataWarrior

A Free Cheminformatics Program for Data Visualization and Analysis

DebateGraph

DebateGraph offers a way to learn, deliberate and decide on complex issues.

Dedoose

Biology

A cross-platform app for analyzing qualitative and mixed methods research.

Desmos

Physical Science and Technology

An advanced graphing calculator as a web application and a mobile application.

dftd4

Biology

A generally applicable atomic-charge dependent London dispersion correction.

DISK

Biology

Automate the hypothesize-test-evaluate discovery cycle

DMP Tool

Biology

Data management plan templates for many large funding agencies.

DocGraph - Linea

Health

Discover, aggregate, and enrich new open healthcare datasets.

Docollab

Biology

A collaborative workspace for projects, tasks, documents, spreadsheets.

El-MAVEN

Biology

An open-source high throughput metabolomics tool

eLABInventory

Biology

An intuitive and flexible solution for inventory management in laboratories.

Emerald Cloud Laboratory

Biology

Web-based life sciences lab to run experiments from anywhere in the world.

Engauge Digitizer

Biology

A tool for plot digitization. Besides obtaining the data, the config is stored for each plot individually, making the process reproducible and more fail proof.

eSurveys Pro

Biology

A software solution that enables them to conduct online surveys.

Experimonth

Biology

Citizen science; month-long challenges to collect data

EyeWire

Biology

A game to map the 3D structure of neurons to contribute to scientific discovery.

Figshare

Open access repository to preserve and share research.

Findings

Biology

Electronic lab notebook (with some protocol sharing)

Firefly

A freely available ab initio and DFT computational chemistry program

Flypapers

Flypapers is a drosophila literature Twitterbot

Galaxy

Biology

An open web-based platform for biomedical data integration and analysis

Galaxy Hub

Biology

Community Hub for computational biology

Galaxy Zoo

Crowdsourced science project to assist in classifying over a million galaxies